Additional file 1: of Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

R code for obtaining simulation results with replicates (Table 1 ). After execution of this R-code with default parameter settings, the average AUC values of 100 trials under the following conditions shown in Table 1 can be obtained: PDEG = 5 %, (0.5, 0.4, 0.1) for (PG1, PG2, PG3), and Nrep = 3. The results in Additional file 2 can also be obtained by changing the parameter Nrep to be 6 or 9. (R 12 kb)