Additional file 1 of Population structure, selection signal and introgression of gamecocks revealed by whole genome sequencing

Additional file 1: Table S1. Summary of all sample data. Table S2. The candidate genes of top 1% Fst. Table S3. The candidate genes of top 1% π-Ratio. Table S4. The candidate genes of top 1% XP-EHH. Table S5. Summary information of candidate genes shared by three methods and other focused candidate genes. Table S6. GO enrichment analysis on the candidate gene identified by top 1% Fst. Table S7. GO enrichment analysis on the candidate gene identified by top 1% π-Ratio. Table S8. GO enrichment analysis on the candidate gene identified by top 1% XP-EHH. Table S9. KEGG enrichment analysis on the candidate gene identified by top 1% Fst. Table S10. KEGG enrichment analysis on the candidate gene identified by top 1% π-Ratio. Table S11. KEGG enrichment analysis on the candidate gene identified by top 1% XP-EHH. Table S12. Results of D- statistics in the form, G. sonnerattii), G. varius). Table S13. Results of D-statistics in the form, G. g. gallus), G. varius). Table S14. Significant introgression region between G. sonnerattii and Euramerican gamecocks. Table S15. Candidate introgression genes between G. sonnerattii and Euramerican gamecocks. Table S16. GO enrichment analysis on the candidate introgression genes between G. sonnerattii and Euramerican gamecocks. Table S17. KEGG enrichment analysis on the candidate introgression genes between G. sonnerattii and Euramerican gamecocks. Table S18. Significant introgression region between G. g. gallus and SEA. Table S19. Candidate introgression genes between G. g. gallus and SEA. Table S20. Go enrichment analysis on candidate introgression genes between G. g. gallus and SEA. Table S21. KEGG enrichment analysis on the candidate introgression genes between G. g. gallus and SEA. Table S22. Candidate introgression genes between G. g. gallus and Tur. Table S23. Candidate introgression genes between G. g. gallus and XSBN. Table S24. Candidate introgression genes between G. g. gallus and JPN.