Discordance (%) between imputed genotypes and actually observed minor allele genotypes1 at rare and low-frequency SNPs on the exome chip but not in the Omni2.5.

1A minor allele genotype is defined as a genotype that carries at least one copy of the minor allele, and discordance here is measured against the total number of observed minor allele genotypes at rare and low-frequency SNPs.2Phase 1 of the 1KGP, consisting of 1,092 subjects.3Singapore Sequencing Malay Project, consisting of 96 Southeast Asian Malays that have been whole-genome sequenced at 30X.4Singapore Sequencing Indian Project, consisting of 36 South Asian Indians that have been whole-genome sequenced at 30X.Discordance (%) between imputed genotypes and actually observed minor allele genotypes1 at rare and low-frequency SNPs on the exome chip but not in the Omni2.5.