Sequencing of 20 sample sites at the Kleine Schmalenau stream in NRW, Germany. 5 kick samples were taken per site. Macroinvertebrates were sorted from debris and identified based on morphology prior to sequencing. Targeted loci environmental. Macroinvertebrate kicksamples
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下载链接:
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA318730
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资源简介:
Goal of this project is to test DNA metabarcoding methods for stream assessment. At 20 sample sites kick samples were taken and macroinvertebrates identified based on morphology. Afterwards, DNA from the bulk samples was extracted and the COI gene amplified. Sequencing was done on the illumina system.Main research objectives:- testing of presorting samples by specimen biomass, to reduce sequencing depth (large organisms will contribute substantial amount of DNA in the extraction, thus presorting of specimens and adjusting of used amount of tissue migth help reducing this bias).- Comparison of performance of traditional morphological identification vs. DNA metabarcoding of complete kick samples.
创建时间:
2016-04-18



