Details about whole genome re-sequencing (WGRS) dataset used for evaluation of the pipeline.

Raw reads from above mentioned datasets were filtered and then aligned against the chickpea genome. These reads covered 92% of the reference genome. The pre-processing step of pipeline trimmed 100 bp reads into paired end reads of length 86 bp/87 bp each. The Hat Trick genotype showed half the number of SNPs called in comparison with other genotypes.