CLIP-seq analysis annotation data resource

This dataset contains the annotation files/genome indices required for CLIP-seq data analysis using the workflow CLIP-seq workflow. A brief description of files available in this resource is given below: rRNA_reference.fa rRNA reference sequences used to filter out rRNA reads from analysis GRCh38_annotation_STAR_index.tar.gz This tar archive contains GRCh38 V42 GFF3 gene annotation and STAR index used in CLIP-seq analysis GRCh38_chrR_DNA_annotation_STAR_index.tar.gz This tar archive contains GRCh38 V42 + chrR GFF3 gene annotation and STAR index used in CLIP-seq analysis Histone_stem_loop_3UTR_primary_reference_GRCh38_Rfam_15_1.bed.gz Bed file containing histone stem loop reference locations which were used as primary references Histone_stem_loop_3UTR_extended_reference_GRCh38_Rfam_15_1.bed.gz Bed file containing histone stem loop reference locations extracted using relaxed thresholds RBFOX2.meme RBFOX2 TGCATG motif Position Weight Matrix (PWM) in .meme format RBFOX2_TGCATG_merged_motifs_GRCh38.bed.gz RBFOX2 motifs extracted using fimo scan on GRCh38 fasta seqences using the PWM given this archive, in BED6 format