Datasets for "Phylogeny, Biogeography and Morphological Evolution of the Treehopper-Like Leafhoppers (Hemiptera: Cicadellidae) Megophthalminae and Ulopinae"

The following 6 files were used to reconstruct the phylogeny of the Megophthalminae and Ulopinae.
1. Taxon_sampling.csv: contains the sample IDs (1st column) which were used in the alignments and the taxonomic information (2nd to 6th columns).
2. concatenated_aa_partition.nex: the partitioning schemes for the maximum likelihood analysis using concatenated_aa.phy. This file partitions the 52,024 amino acid positions into 427 character sets.
3. concatenated_aa_.phy: a concatenated amino acid dataset with 52,024 amino acid positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.
4. concatenated_nt_partition.nex: the partitioning schemes for the maximum likelihood analysis using concatenated_nt.phy. This file partitions the 156,072 nucleotide positions into 427 character sets.
5. concatenated_nt_.phy: a concatenated nucleotide dataset with 156,072 nucleotide positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.
6. Individual_gene_alignment.zip: contains 427 FASTA files, each one represents the nucleotide alignment for a gene. Hyphens are used to represent gaps. These files were used to construct gene trees using IQ-TREE v1.6.12, followed by multispecies coalescent analysis using ASTRAL v 4.10.5 based the maximum likelihood trees with the average SH-aLRT and ultrafast bootstrap values of ≥ 70.