Additional file 1 of The nature and distribution of putative non-functional alleles suggest only two independent events at the origins of Astyanax mexicanus cavefish populations

Additional file 1: Sheet1. Description of columns content of sheet2, sheet3, sheet4 and sheet5. Sheet2. List of the 533 loss-of-function variants found in cave populations. Sheet3. Correspondence between gene defined in Policarpo et al. 2021 and their annotation in the Ensembl database. Sheet4. List of 12 genotyped loss-of-function variants. The last line written in orange correspond to a loss-of-function variant that did not pass our variant filters, as only one allele was found among 12 individual from Tinaja, but that we genotyped due to its location on the per2 gene, often found as pseudogene in cave organisms. Sheet5. Genotype and Phenotype score for each Toro individual.