Additional file 6 of Exploring RNA cargo in extracellular vesicles for pleural mesothelioma detection

Additional file 6: Table S1. Mapping rate of RNA-seq reads from PM-EV samples. Mapped reads were obtained with STAR. Table S2. Biotypes of genes expressed among 4 PM-EV samples. Expressed genes are those with Kallisto counts > 0 in all 4 samples. Table S3. TPM expression of the genes expressed across 4 PM-EV samples. TPM values provided by Kallisto. Table S4. Qsmooth batch-corrected and TMM normalized counts of Plasma-EV and PM-EV samples. Table S5. EdgeR results of differential gene expression between PM-EV and Plasma-EV samples. S and E marker genes are reported in the “marker” column. Table S6. Results of qPCR analysis of selected genes in PM-EVs and matching primary cells. Table S7. Results of fgsea enrichment analysis in PM-EV samples. Table S8. Sequences of primers used for qPCR analysis. Table S9. Characteristics of healthy plasma donors from GSE100206 dataset. Table S10. Clinical characteristics associated with the non-PM cells used for qPCR analysis. Table S11. Results of qPCR analysis of selected genes in PM-EVs and non-PM-EVs.