OrgTrans

This repository provides a standardized benchmark dataset for organoid detection and instance segmentation, curated from multiple high-quality public repositories. This involved refining loose annotations, supplementing missing labels, and converting annotation formats where necessary. References and Original Sources Users are requested to cite both this repository and the original publications listed below: Organoid Type Original Dataset Reference URL / DOI Intestine OrgaQuant Kassis et al. (2019) https://osf.io/etz8r Intestine OrgaSegment Lefferts et al. (2024) https://doi.org/10.5281/zenodo.10278229 Intestine Tellu Domènech-Moreno et al. (2023) https://doi.org/10.5281/zenodo.6768583 Lung DeepLUMEN Abdul et al. (2021) https://osf.io/g2a7r/ Colon OrgaExtractor Park et al. (2023) https://github.com/tpark16/orgaextractor Usage & License The original images and annotations remain the property of their respective authors and are distributed under their original licenses. The refined annotations provided in this repository are shared to facilitate reproducibility and community research. Acknowledgements We gratefully acknowledge the original authors and maintainers of the public datasets used in this work. All original images and annotations remain the property of their respective authors and are used in accordance with their licenses.