Estimated tree using data from Tripp & Manos (2008)
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Our estimated tree generated using data from Tripp & Manos (2008). The tree is based on the nuclear ribosomal ITS + 5.8S region and the chloroplast trnG-trnR region for 115 species in the genus Ruellia and one outgroup, Sanchezia speciosa. We obtained the alignment of these genes from TreeBASE under study ID S1995. The tree was estimated using BEAST v2.1.3 (Bouckaert et al., 2014) on the constrained topology from Tripp & Manos (2008). We used a GTR + Γ model of nucleotide evolution with separate partitions for each gene and codon position, a relaxed log-normal clock, and a birth-death prior. Further information and full references can be found in the supplementary material of our paper.
创建时间：
2016-03-23
