Monkey Microbiome Across Sites: Model for Investigating Inaccessible Human Niches

This Zenodo repository hosts the complete processed dataset and codes to generate the figures in the paper “Monkey Microbiome Across Sites: Model for Investigating Inaccessible Human Niches.” The dataset includes: Metagenome-assembled genomes (MAGs) and metadata Prodigal-predicted amino acid sequences (FAA) for all MAGs Species- and pathway-level taxonomic profiles (Kraken2/Bracken, HUMAnN3, 2bRAD-M) CAZyme and PUL annotations generated using dbCAN4 Antibiotic resistance gene (ARG) annotation outputs Biosynthetic gene cluster (BGC) predictions from antiSMASH / associated tools Bile acid concentration measurements for all gastrointestinal sites R codes to generate all figures The repository is designed as a reusable resource for researchers interested in primate gut microbiome ecology, metagenomic functional analysis, strain-level evolution, or host–microbe metabolic interactions.