mxplore: miRNA-gene interactions

Processed files for mxplore. Files needed for running mxplore: The mxplore_required_data.zip archive contains: exclude files for text mining (e.g. ambiguous names) (excludes) input ontology files in obo-format (obodir) output synonym lists used for text mining (synonyms) files required for mapping NCIT gene identifiers to symbols ( ncit_conversion_folder ) The archive is to be unzipped within the mxplore main folder and to be named required_data. Front-end files: IGV.js compatible gene definitions: Organism/genome Type Filename mouse/mm10 gene mm10_gene_annotation.pickle mouse/mm10 miRNA mm10_mirna_annotation.pickle human/hg19 gene hg19_gene_annotation.pickle human/hg19 miRNA hg19_mirna_annotation.pickle sqlite database including context information for all relevant interaction documents: cons_evidences.db miRNA-gene interactions (without context information) for all mxplore interactions: mxplore_table_mx.tsv For source code, please visit the project GitHub at https://github.com/mjoppich/mxplore . Intermediate Output Files The aggregated_results.zip contain all aggregated miRNA-gene interactions as well as context information after running createEntEntRelation.py and createContextInfo.py .