Additional file 6: of Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data

Table S1. Homozygous variants from a Sall2 +/− littermate used to crossvalidate the congenic footprint in Sall2 KO. Table S2. heterozygous variants of the latter embryo. Table S3. KO-linked variants annotated with the heterozygous calls from Table S2. Table S4. Sall2 KO congenic genes in the footprint of this line in Chr 14. (XLSX 431 kb)