Additional file 1: of The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages

Table S1. List of samples analysed by NGS. Table S2. List of variant positions in the whole set of 150 Y chromosomes. Table S3. Time estimates (kya) for the nodes of Fig. 2a, obtained with BEAST assuming both a strict and a relaxed clock. Table S4. List of SNPs used for the molecular dissection and population analysis of the four trans-Saharan clades. Table S5. Relative frequencies (percentage) of the A3-M13, E-M2, E-M78 and R-V88 sub-haplogroups in the 145 populations analyzed. Table S6. Twenty-two blocks of the X-degenerate portion of the MSY targeted for the NGS. Table S7. List of the unique fragments of the capture probe set covering the 22 selected MSY regions. Table S8. Description of the two unassigned variant positions. Table S9. Branch assignment of the SNPs that have been extracted from the literature. (XLSX 1131 kb)