Additional file 2 of Transcriptional dynamics and chromatin accessibility in the regulation of shade-responsive genes in Arabidopsis

Additional file 2: Supplementary tables. Table S1. List of primers used in this study. Table S2a. PIF457 upregulated genes. Table S2b. PIF457 downregulated genes. Table S3. PIF7 direct targets and shade regulated genes. Table S4a. Differentially expressed genes in RNA-seq in response to LRFR. Table S4b. Gene enrichment analysis of the RNA-seq in response to LRFR. Table S4c. TPM of genes from the RNA-seq in response to LRFR. Table S4d. HTSEQ counts of RNA-seq in response to LRFR. Table S5a. Differential analysis of ATAC-seq in response to LRFR. Table S5b. Clustering of differentially accessible regions in ATAC-seq in response to LRFR. Table S5c. MACS3 peak counts for ATAC-seq in response to LRFR