Annotations, RNA-seq expression, and differential gene expresssion for the H. contortus protein-coding gene set.

We annotated predicted protein products with N-terminal signal sequences, conserved protein domains, orthologies to genes in related nematode species, and Gene Ontology (GO) terms describing biological and molecular functions. Protein-coding genes were predicted by Doyle et al. [70]. Since the annotation methods we used for this H. contortus proteome were identical to those we used for our A. ceylanicum v2.1 proteome, almost all the data columns used here are equivalent to those in S1 Table. One data column unique to this table is “Hco_ES”, which denotes H. contortus genes previously demonstrated by Wang et al. [47] to encode ES proteins. (XLSX)