EGP Mitochondrial Genome Analysis on GIAB Whole-Genome Sequencing Data

Summary: This dataset consists of running EGP version 1.3 on whole-genome sequencing data from the GIAB. The link to EGP is here https://github.com/tycheleturner/ElGenomaPequeno. Author: Tychele N. Turner, Ph.D. Short Writeup: EGP version 1.3 on GIAB: Short-read WGS CRAM files were downloaded through the paths present in this file https://raw.githubusercontent.com/genome-in-a-bottle/giab_data_indexes/refs/heads/master/AshkenazimTrio/alignment.index.AJtrio_Illumina300X_wgs_novoalign_GRCh37_GRCh38_NHGRI_07282015 Public Dataset EGP Result File Type MD5 GIAB Mitochondrial Genome Fasta Files for MEGA 5eac6ec7d36307aa401fd5441b38a506 GIAB Mitochondrial Genome MitoMaster Result File 1151ae74c8e515f4f39bef816bb55d6a GIAB Mitochondrial Genome Variant Tables b3e342fe9827df2e399f5685f84cd4dc GIAB Mitochondrial Genome Copy Number 3c45c19f76f71b3ccaad155565ead5e4 Please note: I have found that with Zenodo you must use "Download All" for the copy number table to properly open.