Common bean (Phaseolus vulgaris) Heirloom-Conventional Panel (HCP) single nucleotide polymorphism genotype data

DNA was isolated from leaf tissue of young bean plants of each genotype grown in controlled-environment conditions at the University of Guelph. The NucleoSpin Plant II kit (Macherey-Nagel, Germany) or the DNeasy Plant Mini Kit (Qiagen, Canada) was used to extract DNA, following standard protocols. Genomic DNA was analyzed at the Genome Quebec Innovation Centre (McGill University, Montreal) for single nucleotide polymorphisms (SNPs) using the Illumina Infinium iSelect Custom Genotyping BeadChip (BARCBEAN6K_3) containing 5398 SNPs (Song et al., 2015). SNP data was aligned to Pv 02 build of the Phaseolus vulgaris genome. SNP data was used for identity by state and nucleotide diversity analyses.