Zero-Shot Protein Segmentation (ZPS) Data and Embeddings

uniprotkb_Human.txt this is a raw text file that contains a downloaded copy of UniProtKB this inlcudes all reviewed human protein sequences we used annotations from this file to copmare to ZPS predictions uniprotkb_Human_Sequences.fasta this is a fasta file that contains reviewed human protein sequences these are the sequences we used as input to ProtT5 to generate protein embeddings ZPS_Boundaries.tsv this is a tab separated file that contains the boundaries of protein segments defined by ZPS for reviewed human protein sequences we used zero-based indexing for the protein boundaries ZPS_Segment_Embeddings.hdf5 this is a hdf5 file that contains segment embeddings for the human proteome see "Zero-shot segmentation using embeddings from a language model identifies functional regions in the human proteome" A. G. Sangster 2025 for definition of segment embeddings segment boundaries in this file are also in zero-based indexing