Immune-epithelial-stromal networks define the cellular ecosystem of the small intestine in celiac disease

spatial_transcriptomics_zenodo.RDS - Seurat object RDS file with 10x Visium spatial transcriptomics dataset. gamma_delta.RDS - Seurat object RDS file with scRNA-Seq 10x dataset from gamma-delta and CD8+ T-Cells. BD_CD8.RDS - Seurat object RDS file with scRNA-Seq BD Rhapsody dataset from CD8+ T-Cells. BD_CD4.RDS - Seurat object RDS file with scRNA-Seq BD Rhapsody dataset from CD4+ T-Cells. BD_CD45.RDS - Seurat object RDS file with scRNA-Seq BD Rhapsody dataset from CD45+ Immune cells. single_cell_CD45.RDS - Seurat object RDS file with scRNA-Seq 10x dataset from CD45+ Immune cells. cd8.RDS - Seurat object RDS file with scRNA-Seq 10x dataset from CD8+ T-Cells. cd4.RDS - Seurat object RDS file with scRNA-Seq 10x dataset from CD4+ T-Cells. epi.RDS - Seurat object RDS file with scRNA-Seq 10x dataset from epithelial cells. eecs.RDS - Seurat object RDS file with scRNA-Seq 10x dataset from enteroendocrine cells.