Clusters of Alpha- and Betaproteobacterial Genomes for in silico Prospecting of Nodulating Diazotrophs

Clusters of Alpha- and Betaproteobacterial Genomes for in silico Prospecting of Nodulating Diazotrophs File descriptions below. File: AlphaBeta_sequences.fas Header pattern format: The headers contain the follow markers: id_#_[protein name] - where # is the number related to the protein, markerd followed by the protein name ProductID - WP id Organism - species AccessionID - NCBI accession number example: >id_5_leucine--tRNA ligase ProductID-WP_025456399N1 Organism-Neisseria gonorrhoeae FA 1090 AccessionID-NC_002946N2 File: clusters.txt The file contains the cluster number corresponding to each protein in MULTIFASTA (AlphaBeta_sequences.fas), in the same order. File: pointers.txt The file contains the pointer to the beginning of each sequence in the (AlphaBeta_sequences.fas) file. That is, each number in the pointers.txt file corresponds to the start character of each sequence (in its header). File: dbstructAB.mat File containing cluster information in MATLAB format, for internal use by the RAFTS3G software (Nichio, et al., 2019). References Nichio, B. T. l., de Oliveira, A. M. R., de Pierri, C. R., Santos, L. G. C., Lejambre, A. Q., Vialle, R. A., ... & Raittz, R. T. (2019). RAFTS3G: an efficient and versatile clustering software to analyses in large protein datasets. BMC bioinformatics, 20(1), 392.