COG differential abundance, LEfSe taxonomic biomarkers, and ARG Venn lists for 2,4-DAPG soil metagenome experiment

This deposit contains three datasets supporting the findings of the article "Sustainable Use of 2,4-DAPG-Producing Pseudomonas Strains: Evaluating Biocontrol Benefits Versus Soil Microbiome Risks". 1. DAPG_COG_analysis_results.xlsx — Differential abundance analysis of Clusters of Orthologous Groups (COGs). For each comparison, the following metrics are provided: log2FC, mean relative abundances, percentage prevalence, raw and adjusted p-values, and significance flags at three confidence levels. 2. DAPG_LEfSe_results.xlsx — LEfSe analysis of taxonomic biomarkers at the genus level. For each taxon, the following metrics are provided: mean relative abundance (%), Kruskal-Wallis p-value, effect size, LDA score, enriched group, FDR-adjusted p-value, and a significance flag. 3. DAPG_ARGs_venn_gene_lists.xlsx — Lists of antibiotic resistance genes (ARGs) for each intersection between treatment groups (Control, D-1, D-10). The file includes the following sheets: Only_Control, Only_D1, Only_D10, Control_and_D1, Control_and_D10, D1_and_D10, All_three_groups. All datasets were generated from a shotgun metagenomic experiment assessing the dose-dependent effects of 2,4-diacetylphloroglucinol (2,4-DAPG) on the soil microbiome.