Giant endogenous viral elements in the genome of the model protist Euglena gracilis reveal past interactions with giant viruses

This is the data availability repository for the paper. It contains the supplementary dataset, supplementary figures and the BAM file used for methylation calling. For generating the BAM file, the nanopore .pod5 files were basecalled and mapped to the Euglena genome assembly on NCBI. For detailed methods, see methods section in the paper. Supplementary figure information: S1: Histogram of GC% of GEVEs (blue) with mean at 32% and a 200 Kbp window of Euglena gracilis (red) with mean at 47%. P-value < 0.005 S2: BLAST dotplot of CP83_f against itself showing duplications in the central 80 Kbp region S3: Heatmap showing screening of 95 publicly available transcriptomes against all Euglena GEVE proteins S4: Distribution of hits against recombinases expressed in the transcriptome of the Euglena GEVEs across the Euglena genome S5: Mapped reads from 48 freshwater metagenomes across CP92_2 GEVE with 100 kb flanking region Supplementary Dataset information: Dataset 1: eggnog_annotations Dataset 2: HHPred_predictions