Wheat microsatellite (SSR) markers used in the present study, their assignment to peaks I–IV on flow karyotypes of Ae. umbellulata, Ae. comosa, Ae. biuncialis and Ae. geniculata and their positions on Aegilops chromosomes.

*: Markers tested in wheat-Ae. geniculata addition lines.na: Ae. geniculata specific fragment was not amplified.#: Location of the marker on Aegilops chromosomes was determined according to the presence in the peaks on flow karyotypes.##: Location of the marker on Aegilops chromosomes was determined according to the presence in the wheat-Ae. geniculata addition lines.Xgwm: Röder et al. [39]; Xgdm: Pestsova et al. [60]; Xcfa: Sourdille et al. [65]; Xwmc: Wheat Microsatellite Consortium (http://wheat.pw.usda.gov); Xbarc: The US Wheat and Barley Scab Initiative (http://www.scabusa.org).