The benchmarks for protein-protein, protein-DNA, and protein-RNA docking
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https://zenodo.org/record/10517523
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The benchmarks for protein-protein, protein-DNA, and protein-RNA docking
This dataset contains structures of three docking benchmarks, as well as docking tables. This dataset together with the FTDMP framework (https://github.com/kliment-olechnovic/ftdmp) can be used for docking and scoring complexes, as well as evaluating new scoring functions.
The PDB IDs and structure chain IDs were taken from protein-protein [1], protein-RNA [2-5], and protein-DNA [6] benchmarks. The structures of complexes from all the benchmarks were downloaded directly from the Protein Data Bank (PDB) [7]. All the structures, including complex substituting bound, and unbound monomers have been renumbered according to the FASTA file of the complex. The B-DNA for unbound DNA-protein docking was modeled with ChimeraX [8].
More information and an example of usage can be found in the README.txt file.
创建时间：
2024-01-23
