Dating Alphaproteobacteria evolution with eukaryotic fossils

<br><br>Data and codes for the study Wang, S., Luo, H. Dating Alphaproteobacteria evolution with eukaryotic fossils. Nat Commun 12, 3324 (2021). For a more detailed introduction to each dataset, please see the file Readme.docx. Please let me know should there be any question.<br><br><b>host_asr/</b>: reconstruction of ancestral hosts of<b>phylobayes/:</b> time estimates using phylobayes<b>beast/:</b> time estimates using BEAST<b>phylogeny/:</b> phylogenomic reconstruction of α-proteobacteria+mitochondria with two recoding schemes (<i>dayhoff4</i> and <i>SR4</i>) based on GTR+G+F+C30 under PMSF approximation<b>mcmc3r/:</b> mcmc3r analysis using the 20-taxon (s20) and 40-taxon (s20) subsets of species<b>dating-dna/: </b>time estimates using MCMCTree based on nucleotides<b>dating-aa/: </b>time estimates using MCMCTree based on amino acids. You might wish to note that the tree presented in Fig. 1 corresponds to topo1.<b>dating-expanded/:</b> MCMCTree molecular clock analysis with the expanded genome set based on amino acids<b>dating-cyano/:</b> MCMCTree molecular clock analysis using the cyanobacteria-based strategy<b>scripts/:</b> scripts used in analysis<br>Update for v3:proteins used in MCMCtree analysis uploaded.<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>