Input data for Atollgen pipeline

This dataset contains the AtollGen pipeline inputs, including :

- sources.tar.xz : all data used for AtollGen pipeline 

    - abioteau (fasta files and csv file)

    - iceberg (v1.0: html files)  

    - iceberg_v2 (v2.0: fasta file) 

    - islander (sql dump and sqlite file)

    - iv4 (csv files)

    - jlao (FirmiData: fasta files and xlsx files)

- int.hmm / mob.hmm : hmm files for integration and other mobility modules 

- hmm_signature_categs.json : mapping file between signatures recorded in mobility modules hmm file and mobility module categorisation 

- Pfam-A.hmm.gz : Pfam-A v34.0 frozen version 

- card.json : CARD antibiotic resistance collection file

Defense Finder models (v0.0.3) can be fecthed via macsyfinder download utility (macsydata) on github : https://github.com/gem-pasteur/macsyfinder