TABLE 4 in Phylogeny of the Megascolecidae and Crassiclitellata (Annelida, Oligochaeta): combined versus partitioned analysis using nuclear (28 S) and mitochondrial (12 S, 16 S) rDNA

TABLE 4. — Separate and combined partition support for nodes in the SUM model tree. All values refer to the support by each dataset for clades defined in Fig. 4. Partition support refers to best reverse constraint tree for that method relative to SUM model best tree COMBO model lnL split into 28S sites and mtDNA sites. Shading indicates conflict. c, expected likelihood weight confidence set from COMBO model reverse constraint trees and maximum likelihood best tree. Arranged in order of c, bold values indicate 95% confidence set.
c Bootstrap COMBO COMBO MPallBremer mt28SPartition ∆lnL separate models SUM mt 28Scombined data analysis all mt 28Sclade0.0010098146835.1528.326.8334.6728.176.50A0.009797154.510.515.956.859.1013.736.986.76C0.00896275213.9018.48–4.5916.6210.596.03F0.009884103.76.320.8212.128.7022.5413.379.16V0.008869108.51.53.093.090.003.785.31–1.53H0.0095961210212.107.264.8313.656.217.44T0.0195590–4411.09–0.7511.8312.80–1.2714.07D0.0246554310.99–0.471.454.811.882.93Q0.0280844310.990.950.052.563.02–0.45S0.0275774–155.883.262.614.092.421.67J0.0390694317.130.676.4611.081.569.52B0.03594340.43.62.753.00–0.264.754.360.38K0.0471642–244.092.022.073.100.192.91U0.0427533120.620.620.00–0.280.85–1.13M0.042989106.73.32.752.750.00–0.280.85–1.13R0.0659552–572.540.791.750.771.33–0.56G0.0623142022.233.14–0.911.503.38–1.87L0.07796557–20.888.85–7.974.5610.83–6.27E0.1077797437.534.682.856.633.792.84P0.1047313–145.235.230.005.585.400.18I0.1041363033.592.750.845.585.400.18O0.1739383–1.54.53.19–3.406.601.53–4.415.94N68.4 64.45.82.33.57.45.02.47.95.0average 2.9 per node