Supplement 1. R code for fitting Argos data with argosTrack.

File List

argosTrack.tar.gz (md5: e7e7f6f0e502c42b4cd24ee8f9679e62)

argosTrack.R (md5: 7857ead3f7e13ed67ceb16655b546ac6)

bsam.R (md5: 2f4b064ef9089a90873b0049fea39b31)

crawl.R (md5: f36b3c25fd8e929a3d41cd4867cdfd92)

Description
argosTrack.tar.gz - Source code for the R package argosTrack.

argosTrack.R - Example of how to use the package argosTrack.

bsam.R - R code for analysis of the seal data using bsam.

crawl.R - R code for analysis of the seal data using crawl.

Installing argosTrack on Windows
The argosTrack package depends on the package TMB. To install TMB download and unzip the code from: https://github.com/kaskr/adcomp/archive/master.zip. Open R, change the working directory to the unzipped adcomp-master folder, and run source("install_windows.R"). The command will ask to install Rtools which should be accepted. After a successfull installation of TMB, change the working directory to the folder containing argosTrack.tar.gz and install with library(TMB);install.packages("mvtnorm");install.packages("argosTrack.tar.gz",repos=NULL,type="source").

Installing argosTrack on Linux
The argosTrack package depends on the package TMB. To install TMB download and unzip the code from: https://github.com/kaskr/adcomp/archive/master.zip. In the terminal, change directory to the unzipped adcomp-master folder, and run make install. After a successfull installation of TMB, change the directory to the folder containing argosTrack.tar.gz, open R, and run install.packages("mvtnorm");install.packages("argosTrack.tar.gz",repos=NULL,type="source").

Installing argosTrack on Mac OS X
The argosTrack package depends on the package TMB. To install TMB, install Xcode from the App Store, install gFortran from http://cran.r-project.org/bin/macosx/tools/, and download and unzip the TMB source code from: https://github.com/kaskr/adcomp/archive/master.zip. Open the terminal and change the directory to the unzipped adcomp-master folder. Run the command make install. After a successfull installation of TMB, change the directory to the folder containing argosTrack.tar.gz, open R, and run install.packages("mvtnorm");install.packages("argosTrack.tar.gz",repos=NULL,type="source").