Reference data bundle for PacificBiosciences/HiFi-human-WGS-WDL

Static input files to support alignment, variant calling, filtering, and annotation for human HiFi WGS using the GRCh38_no_alt_analysis_set or GRCh38_GIABv3_no_alt_analysis_set_maskedGRC_decoys_MAP2K3_KMT2C_KCNJ18 references. https://github.com/PacificBiosciences/HiFi-human-WGS-WDL $ tree hifi-wdl-resources-v4.0.0-GRCh38hifi-wdl-resources-v4.0.0-GRCh38└── GRCh38 ├── human_GRCh38_no_alt_analysis_set.fasta ├── human_GRCh38_no_alt_analysis_set.fasta.fai ├── methbat │ ├── cpgIslandExt.sorted.hg38.tsv │ └── README.md ├── README ├── sawfish │ ├── annotation_and_common_cnv.hg38.bed.gz │ ├── annotation_and_common_cnv.hg38.bed.gz.tbi │ ├── expected_cn.hg38.XX.bed │ ├── expected_cn.hg38.XY.bed │ └── README └── trgt ├── adotto_strchive_20250827.hg38.bed.gz └── README.md 4 directories, 12 files $ tree hifi-wdl-resources-v4.0.0-GRCh38_GIABv3hifi-wdl-resources-v4.0.0-GRCh38_GIABv3└── GRCh38_GIABv3 ├── human_GRCh38_GIABv3_no_alt_analysis_set_maskedGRC_decoys_MAP2K3_KMT2C_KCNJ18.fasta ├── human_GRCh38_GIABv3_no_alt_analysis_set_maskedGRC_decoys_MAP2K3_KMT2C_KCNJ18.fasta.fai ├── methbat │ ├── cpgIslandExt.sorted.hg38.tsv │ └── README.md ├── README ├── sawfish │ ├── annotation_and_common_cnv.GRCh38_GIABv3.bed.gz │ ├── annotation_and_common_cnv.GRCh38_GIABv3.bed.gz.tbi │ ├── expected_cn.hg38.XX.bed │ ├── expected_cn.hg38.XY.bed │ └── README └── trgt ├── adotto_strchive_20250827.hg38.bed.gz └── README.md 4 directories, 12 files