Data and code for: Passive acoustic monitoring reveals the limited distribution of an indicator species, the White-headed woodpecker (Picoides albolarvatus), in the northern Blue Mountains

Data and code for recreating analyses presented in Passive acoustic monitoring reveals the limited distribution of an indicator species, the White-headed woodpecker (Picoides albolarvatus), in the norhtern Blue Mountains File: WHWO_Station_HSI_Analysis_071725.csv Description: Data used to compare habitat suitability values between occupied and unoccupied stations. Variables station: categorical variable denoting the location audio recordings were collected. hsi: the habitat suitability for a given station, calculated by averaging the habitat suitability values of a 200m radius, circular buffer centered on each station. whwo_state: binary variable denoting if the station was consider occupied or unoccupied. hexagon: categorical variable denoting the hexagon identifier. File: whwo_occupancy_analysis_102325.R Description: R script used to fit and summarize a Bayesian occupancy model File: whwo_HSI_analysis_071725.R Description: R script used to compare habitat suitability at occupied and unoccupied stations and hexagons. File: WHWO_Hexagon_HSI_Analysis_071725.csv Description: Data used to compare habitat suitability values between occupied and unoccupied hexagons Variables hexagon: categorical identifier denoting the hexagon ID whwo_state: binary variable denoting if the station was consider occupied or unoccupied. hsi: the habitat suitability for a given hexagon, calculated by averaging the habitat suitability values contained with the 500 hectare hexagon. File: whwo_ssp_occ_data.csv Description: WHWO occupancy data Variables year: year station was surveyed (2022 or 2023). station: categorical variable denoting the station ID week: numerical value indicating survey period total_monitoring_time: total time of audio recordings collected at a given station min_date: first day of the survey period whwo_state: binary variable denoting if the station was consider occupied or unoccupied. Code/software R version 4.2.0 (2022-04-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Monterey 12.3.1 Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] cowplot_1.1.3 performance_0.11.0 lmerTest_3.1-3 lme4_1.1-29 Matrix_1.4-1 ggplot2_3.5.1 [7] tidyr_1.3.1 dplyr_1.1.4 reshape2_1.4.4 jagsUI_1.6.2 R2jags_0.8-9 rjags_4-16 [13] coda_0.19-4.1 loaded via a namespace (and not attached): [1] tidyselect_1.2.1 purrr_1.0.2 splines_4.2.0 lattice_0.22-6 colorspace_2.1-0 [6] vctrs_0.6.5 generics_0.1.3 mgcv_1.9-1 utf8_1.2.4 rlang_1.1.3 [11] pillar_1.9.0 nloptr_2.0.3 glue_1.7.0 withr_3.0.0 lifecycle_1.0.4 [16] plyr_1.8.9 stringr_1.5.1 munsell_0.5.1 gtable_0.3.5 bayestestR_0.13.2 [21] labeling_0.4.3 datawizard_0.10.0 parallel_4.2.0 fansi_1.0.6 Rcpp_1.0.12 [26] scales_1.3.0 see_0.8.4 abind_1.4-5 farver_2.1.1 stringi_1.8.4 [31] insight_0.19.10 numDeriv_2016.8-1.1 grid_4.2.0 cli_3.6.2 tools_4.2.0 [36] magrittr_2.0.3 patchwork_1.2.0 tibble_3.2.1 pkgconfig_2.0.3 MASS_7.3-60 [41] minqa_1.2.6 rstudioapi_0.16.0 R6_2.5.1 boot_1.3-30 R2WinBUGS_2.1-22.1 [46] nlme_3.1-164 compiler_4.2.0