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Unassembled HI-FI long-read whole-genome sequencing of Caenorhabditis tropicalis wild strains

NIAID Data Ecosystem2026-05-10 收录

虫类基因组学

群体遗传多样性

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP665677 数据链接链接失效反馈

官方服务：

资源简介：

Long-read DNA sequencing of diverse C. tropicalis wild strains for population genomic analysis

应用场景：

创建时间：

2026-01-24

SNP基因型

群体遗传多样性

Positions are denoted according to the PN40024 reference genome sequence (assembly version 12X.V0). Observed heterozygosity (Ho) and inbreeding coefficient (F) were calculated using PLINK software v1.

Figshare2018-02-09 更新60

Genetic diversity and Hardy-Weinberg equilibrium tests in the seven populations throughout Doñana Natural Region.

群体遗传多样性

哈迪-温伯格平衡

N, number of individuals; HWE, significance from Hardy-Weinberg equilibrium; AR, mean allelic richness overall loci; H(E)n.b. non–biased expected heterozygosity; H(O), observed heterozygosity.

NIAID Data Ecosystem50

Identification of nematode PDEs from the phylogenomic pipeline.

虫类基因组学

磷酸二酯酶

Identification of nematode PDEs from the phylogenomic pipeline.

NIAID Data Ecosystem40

T. b. gambiense type I Mongo minicircles, maxicircles, unedited and edited mRNAs

虫类基因组学

RNA编辑机制

The minicircles, maxicircle, unedited and edited mRNAs used for gRNA annotationsee thesis for details

Figshare2024-09-03 更新60

Analysis of cyt-b (first number) and D-loop (second number) genetic diversity measures.

群体遗传多样性

线粒体D-loop变异

Number of different haplotypes (h) and private haplotypes (P-h), haplotype diversity (h.d.), nucleotide diversity (π) x10-3, - not applicable (n.a.), not determined (n.d.)

NIAID Data Ecosystem50

Unassembled HI-FI long-read whole-genome sequencing of Caenorhabditis tropicalis wild strains

资源简介：

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