Predicted genome-wide chromatin contact differences among 71 bonobos and chimpanzees

This file contains predicted chromatin contact differences in HFF cells using Akita among pairs of 71 bonobos and chimpanzees at 4,420 ~ 1 Mb genomic windows in the panTro6 genome. Each entry corresponds to a pairwise comparison at a given window. Data per comparison includes the individual IDs in the pairwise comparison, lineages represented, chromosome, position, window ID, mean squared error, Spearman correlation, divergence (1 - Spearman correlation), and the number of nucleotide differences for the pair at the given window.

Methods
All data in this file were generated using publicly available datasets (see below). Variants were filtered using bcftools to retain high-quality sites and high-quality genotypes. The dataframe was created using Pandas in a Python Jupyter notebook.

Data used to generate these predictions:

chimpanzee reference sequence (https://hgdownload.soe.ucsc.edu/goldenPath/panTro6/bigZips/)
Illumina short reads for 71 bonobos and chimpanzees (https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA189439, https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB15086)