Additional file 9 of The spectrum of tuberculosis described as differential DNA methylation patterns in alveolar macrophages and alveolar T cells

Additional file 9. Supplemental table S1. Differentially methylated CpG sites (DMCs) from analyses in alveolar macrophages for TB status. Merged list of DMCs from Pat, Exp and Con contrasts using absolute MMD > 0.2 and Ajd.p-val < 0.05. Supplemental table S2. Differentially methylated CpG sites (DMCs) from analyses in alveolar T cells for TB status. Merged list of DMCs from Pat, Exp and Con contrasts using absolute MMD > 0.2 and Ajd.p-val < 0.05. Supplemental table S3. Differentially methylated CpG sites (DMCs) identified between Linköping and Lima patient samples (n= 2+2) in Alveolar T cells with Adj.p-val <0.1. (No DMCs identified in HLA-DR). Supplemental table S4. Common Differentially methylated Genes (DMGs) from analyses in alveolar macrophages and T cells for TB status. Using relaxed cutoffs MMD > 0.1 and Ajd.p-val < 0.05. Supplemental table S5. Differentially methylated CpG sites (DMCs) identified in alveolar macrophages for IGRA status with MMD >0.1, Ajd.p-val < 0.05. Supplemental table S6. Differentially methylated CpG sites (DMC) identified in alveolar T cells for IGRA status with MMD >0.1, Ajd.p-val< 0.05.