Repression of translation by uORFs is not widespread but highly gene-specific

P { margin-bottom: 0.08in } Scer_CDS.gtf : annotation file coding sequences S. cerevisiae Scer_5UTR.gtf: annotation file 5'UTR sequences S. cerevisiae Spom_CDS.gtf: annotation file coding sequences S. pombe Spom_5UTR.gtf: annotation file 5'UTR sequences S. pombe Scer_uORFs.fa: upstream ORF (uORF) sequences S. cerevisiae Spom_uORF.fa: upstresm ORF (uORF) sequences S. pombe Scer.aa-_5UTR_counts.txt: table of counts 5'UTR Scer.aa- Scer.aa-_CDS_counts.txt: table of counts coding sequences Scer.aa- Scer.aa_uORF_counts.txt: table of counts uORFs Scer.aa- Scer.Oxi_5UTR_counts.txt: table of counts 5'UTR Scer.Oxi Scer.Oxi_CDS_counts.txt: table of counts CDS Scer.Oxi Scer.Oxi_uORF_counts.txt: table of counts uORFs Scer.Oxi Spom_N-_5UTR_counts.txt: table of counts 5'UTR Spom.N- Spom_N-_CDS_counts.txt: table of counts CDS Spom.N- Spom_N-_uORF_counts.txt: table of counts uORFs Spom.N- translated_uORF_Spom.N-.txt: modified RibORF output Spom.N- SUB_Scer.aa-_CDS_counts.xls: subsampled table of counts CDS Scer.aa- SUB_Scer.Oxi_CDS_counts.xls: subsampled table of counts CDS Scer.Oxi SUB_Spom.N-_CDS_counts.xls: subsampled table of counts CDS Spom.N- Scer.aa-_DE_genes.xlsx: differentially expressed genes based on CDS counts Scer.aa- Scer.Oxi_DE_genes.xlsx: differentially expressed genes based on CDS counts Scer.Oxi Spom.N-_DE_genes.xlsx: differentially expressed genes based on CDS counts Spom.N- Scer.aa-_TE_genes.xlsx: genes with significantly different TE in stress vs normal Scer.aa- Scer.Oxi_TE_genes.xlsx: genes with significantly different TE in stress vs normal Scer.Oxi Spom.N-_TE_genes.xlsx: genes with significantly different TE in stress vs normal Spom.N-S_5UTR.list: list of S.cerevisiae genes with 5'UTR sequences available