File S1 - Analysis of Genome-Wide Copy Number Variations in Chinese Indigenous and Western Pig Breeds by 60 K SNP Genotyping Arrays

Supporting tables. Table S1, Information of identified CNVRs. The description and information of all 348 identified CNVRs were showed in Table S1a. The information of 166 CNVRs which were identified by excluding the CNVR event detected only in one individual were showed in Table S1b. Table S2, The CNVs numbers detected in 286 individuals. Table S3, Information of genes in the identified CNVRs. Table S4, Gene ontology (GO) analysis of genes in identified CNVRs. Table S5, Pathway analysis of genes in identified CNVRs. Table S6, Previously reported QTLs overlapping with identified CNVRs. Table S7, Information of CNVRs in Chinese normal size and minipig breeds. Table S7a showed the information of CNVRs in four Chinese normal size pig breeds. Table S7b showed the information of genes in the CNVRs of four Chinese normal size pig breeds. Table S7c showed the information of CNVRs in two Chinese minipig breeds: Bama and Wuzhishan pigs. Table S7d showed the information of genes in the CNVRs of Bama and Wuzhishan pigs. Table S8, Information of CNVRs and CNV-involved genes in Chinese indigenous and western breeds. Table S8a showed information of CNVRs in Chinese indigenous and western breeds. Table S8b showed information of genes in the CNVRs of Chinese indigenous and western breeds. Table S9, Comparison between identified CNVRs and those reported in other pig CNVR papers. Table S10, Information and the primers used in qPCR analysis of the 12 CNVRs chosen to be validated. (XLSX)