Scripts for the population genomics of the Réunion harrier

A set of scripts to reproduce population genomic analyses of the Réunion harrier. Note that these scripts should be the same as the ones found on Github: https://github.com/YannBourgeois/Scripts_harrier (commit 20a56b1).In each folder there is a README file, which is simply a text file containing the annotated commands that were used for different parts of the analysis. These commands often call bash scripts (files ending with '.sh') that can be launched on a SLURM scheduler, but would probably require minor modifications to work on your own resource (e.g. queues names, path to where the data are located, number of cores requested, etc.). Make sure to examine and edit the scripts before launching.The VCF files starting with "fivesamples" correspond to RNA-seq data called with GATK, including monomorphic sites.