Additional file 1: of Phylogenomic analyses reveal a molecular signature linked to subterranean adaptation in rodents

Table S1. Median values of substitution rates for non-synonymous sites (dN) and synonymous sites (dS), non-synonymous to synonymous substitution (dN/dS) ratios, and overall GC content (GC) and GC content at the third codon position (GC3) in the various lineages. Table S2. The 731 GO terms with log(ω BMR/ω Mouse) and log(ω NMR/ω Guinea pig) values higher than zero. Table S3. The 35 GO terms with lower dN/dS in subterranean rodent lineages, as indicated by LRTs. Table S4. The genes with higher dN/dS values in the BMR compared with other species, as indicated by LRTs. Table S5. The genes with higher dN/dS values in the NMR compared with the other species, as indicated by LRTs. Table S6. The PSGs in the BMR. Table S7. The PSGs in the NMR. Table S8. A subset (n = 15) of PSGs in the BMR and NMR. Table S9. Summary of the over-represented GO terms in subterranean lineages. Table S10. Life history data from the AnAge database ( http://genomics.senescence.info/species/ ) for study taxa. (XLS 550 kb)