Figure 1L: Epitope maps and confusion matrix with BM5 Ab sequence inputs

One of AbEMap's applications is to map epitope on a given antigen crystal structure if only the sequence of the antibody is entered by the user.  The results in this dataset are pdb files of the 40 antigens in Zhiping  Weng's docking benchmark v. 5.0 with their b-factor changed to our  protocol's score to reflect the likelihood of each atom being in the epitope when in complex with the respective antibody.

The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on the 40 antigens in BM5 with antibody sequences as the input is also included. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120). This confusion matrix was used to generate Fig 1L.