Genome and Transcriptome references based on hg19 from UCSC, 2015
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下载链接:
https://zenodo.org/record/8432436
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资源简介:
rsem.transcripts.nant2015.fa.gz - bgzipped FASTA reference of transcriptomes
genome.nant2015.fa.gz - bgzipped FASTA human genome reference, with several viral sequences added.
refseq.txt.gz - Exact sequence accessions and mapping coordinates for a RefSeq transcriptome based off the UCSC genome browser for hg19.
Coordinates are BED-style, with one row per transcript, and 1+ transcript per gene.
Column annotation
1. RefSeq Accession
2. Chromosome
3. Strand
4. thinStart (gene boundary, including UTR)
5. thinEnd (gene boundary, including UTR)
6. thickStart (CDS boundary)
7. thinStart (CDS boundary)
8. number of exons
9. comma separated exon starts
10. comma separate exon ends
11. common gene name
12. refseq gene id
13. 0 if non-primary transcript, 1 if primary transcript
创建时间:
2023-10-19



