Additional file 8: Table S1. of Morphological and Transcriptomic Analysis of a Beetle Chemosensory System Reveals a Gnathal Olfactory Center

Summary of the RNAseq data. In column (A) the gene name of the GRs according to [81], the ORs from [115], the SNMPs modified after [116, 117], the T. castaneum orthologous of D. melanogaster genes named after candidates obtained from [46], the GSTs named after [148], the CYPs named after [150] and the remaining ODE candidates de novo named according to their chromosomal localization (Additional file 15: Figure S11). Column B shows the sequences of the ORF based on published annotations or existing gene models, but modified if necessary. Confirmed gene models are highlighted in grey, modified ones are highlighted in yellow, only partially covered but expressed ones are highlighted in orange, genes with low and scattered coverage are highlighted in red, and not highlighted sequences were not manually checked. Columns C–I show the average RPKM values of antennae, mouthparts (piece of the head capsule anterior of the antennae), legs, head (without antennae but including mouthparts), and remaining body of sex-separated adult animals. Columns J–Q show the results of the statistical analysis conducted in R [215] with the DESeq package (version 1.12.0) [216] (from Bioconductor [217], based on five antenna samples and two replicates for the other adult tissues in comparison to body. Columns P–AB show the individual RPKM values of the biological replicates. (XLSX 677 kb)