Additional file 2: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

List of all predicted miRNA loci in the rainbow trout genome with functional, structural and conservation annotation. The list of the 3270 predicted miRNA loci that have been discovered in the study. For each loci, the file gives information about basic information (miRNA id, chromosome location, start and stop of the pre-miR, strand, expresion information, prediction score, pre-miRNA sequence, miRNA sequence, pre-miRNA length and miRNA length), structural annotation (genomic position regarding protein coding genes with sRNA browse annotation or intron annotation), functional annotation for both the pre-miRNA and the mature miRNA (mirbase, Rfam, tRNAs, rRNA or repeat elements annotation) and conservation annotation (conservation of rainbow trout loci in 8 fish species, nm = number of mismatch). (XLSX 1068 kb)