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FASTA file containing the MYB encoding genes at the Aft locus with genomic sequences corresponding to wild and cultivated tomato accessions

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NIAID Data Ecosystem2026-03-13 收录
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https://zenodo.org/record/5650057
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资源简介:
FASTA sequences correspond to the MYB encoding genes An2-like and Ant1. The genomic sequences were combined correspond to Solanum galagpagnese accession LA1141 (this study), S. lycopersicum variety OH8245 (this study), S. lycopersicum variety Heinz 1706 reference genome (Hosmani et al., 2019), LA1996 [MN242011.1, EF433417.1(Sapir et al., 2008; Colanero et al., 2020)], and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), S. lycopersicum accession LA1996 [MN242011.1, EF433417.1 (Sapir et al., 2008; Colanero et al., 2020)], S. chilense accession LA1930 [MN242012.1 (Colanero et al., 2020)] were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/) and the National Center for Biotechnology Information (NCBI) (available at NCBI: https://www.ncbi.nlm.nih.gov).
创建时间:
2021-11-06
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