Mass spectrometry-based proteomics of the Aurantiochytrium limacinum ATCC MYA-1381 zoospore-to-vegetative cell transition (MaxQuant processed data)

This dataset provides standard MaxQuant proteomic output files generated
from an analysis of the Aurantiochytrium limacinum ATCC MYA-1381
zoospore-to-vegetative cell transition. Mass spectrometry data from three
biological time-course replicates were analyzed using two separate protein
prediction sets: one from a JGI genome annotation and the other from the
Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
annotation of the A. limacinum proteome. Each biological replicate in the
dataset includes protein abundance measurements across five time points,
capturing dynamic proteomic changes associated with cellular remodeling,
metabolism, and ectoplasmic network formation. Data is provided as
outputted from MaxQuant, including quantitative values for protein group
identification and peptide-level measurements.