Doctoral thesis-Mengqi Wang-Chapter 4

<strong>Table S1</strong>: General whole genome DNA methylation sequence statistics per sample; <strong>Table S2</strong>: Comparisons of methylation levels of cytosine sites in the context of CpG, CHG and CHH at different genic structures and genomic regions between SCP and HC groups; <strong>Table S3</strong>: List of differentially methylated cytosine sites in the context of CpG; <strong>Table S4</strong>: List of differentially methylated cytosine sites in the context of CHG and CHH; <strong>Table S5</strong>: The distribution of differentially methylated cytosine sites among chromosomes and genic structures; <strong>Table S6</strong>: List of differentially methylated regions identified based on CpG sites; <strong>Table S7</strong>: The distribution of DMCs in genes and the functional enrichment for genes that harbored DMCs; <strong>Table S8</strong>: List of differentially methylated methylation haplotype blocks; <strong>Table S9</strong>: Functional enrichment for genes harboring dMHBs in their promoters, first exons and/or first introns; <strong>Table S10</strong>: List of identified differentially methylated and expressed genes (DMEGs); <strong>Table S11</strong>: Functional enrichment for DMEGs; <strong>Table S12</strong>: Candidate discriminate signatures of SC mastitis selected by sPLS-DA and DIABLO; <strong>Table S13</strong>: Sample information and results of target bisulfite amplicon sequencing for two dMHBs discriminate signatures in a larger sample size; <strong>Table S14</strong>: Information on cows used