Genome assemblies of Bacteroides fragilis CCUG4856T(=ATCC25285=NCTC9343)
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Supplementary material for the manuscript Insights from complete, circular genome assembly and plasmid identification of six clinical multidrug resistant Bacteroides fragilis isolates.
141 genome assemblies of Bacteroides fragilis CCUG4856T(=ATCC25285=NCTC9343) using Illumina and Oxford Nanopore data with the following assemblers and polishing tools
Wtdbg2 v2.3 (https://github.com/ruanjue/wtdbg2)
Miniasm v0.3r179 (https://github.com/lh3/miniasm)
Flye v2.3.7 (https://github.com/fenderglass/Flye)
Canu v1.8 (https://github.com/marbl/canu)
Spades (including Hybridspades) v3.13.0 (https://github.com/ablab/spades)
Skesa v2.3.0 (https://github.com/ncbi/SKESA)
Unicycler v0.4.7 (https://github.com/rrwick/Unicycler)
Nanopolish v0.10.2 (https://github.com/jts/nanopolish)
Racon v1.3.1 (https://github.com/isovic/racon)
Pilon v1.22 (https://github.com/broadinstitute/pilon)
Methods and source code are available in the manuscript and at https://github.com/thsyd/bfassembly
创建时间：
2020-01-24
