Dataset associated with Antczak et al., Environmental conditions shape the nature of a minimal bacterial genome published in Nature Communications 2019.

Each file contains results obtained from a particular method for all the minimal genome proteins. Some of the results files are created by concatenation of separate protein or group of proteins results files.Filename: 3DLigandSite.txtDescription: Structural models (in pdb format) generated by 3DLigandSite.Filename: Argot2.5.txtDescription: Results (in csv format) containing Gene Ontology terms predicted by Argot2.5.Filename: BLASTAgainstUniProt.txtDescription: Best BLAST for each of the proteins.Filename: CATHFunFams.txtDescription: Results (in json format) containing CATH functional familes predicted by CATH FunFHMMer web server.Filename: CombFunc.txtDescription: Results (in tsv format) containing Gene Ontology terms predicted by CombFunc.Filename: DISOPRED3.txtDescription: Disorder ratio for each residue of all the proteins predicted by DISOPRED3.Filename: eggNOG-Mapper.txtDescription: Results (in tsv format) containing Best Orthologous Groups, KEGG pathways, Gene Ontology terms, gene name, etc. predicted for all the proteins by eggNOG-Mapper.Filename: FFPred3.txtDescription: Results containing Gene Ontology terms predicted by FFPred3.Filename: InterPro.txtDescription: Results (in tsv format) containing families from all InterPro resources. Note interpro runs multiple domain/family based methods together so contains the results fro multiple individual programsFilename: LipoP.txtDescription: Results containing predictions of lipoproteins.Filename: LocTree3.txtDescription: Results (in csv format) containing Gene Ontology terms predicted by LocTree3.Filename: Pfam.txtDescription: Domains predicted for each of the proteins by PfamScan.Filename: Phyre2.zip (compressed txt file)Description: Results containing names of matching structural models and the alignment predicted by Phyre2.Filename: TIGRFAM.txtDescription: Families of equivalogs predicted for each of the proteins by Hmmer3.Filename: TMHMM.txtDescription: Results containing proteins topology predicted by TMHMM.Filename: TrSSP.txtDescription: Results containing predictions of transporters and possible substrates made by TrSSP.