RNAseq-derived Read Counts for Primary and Locally Recurring Breast Cancers

Read counts from RNAseq analysis for all 75 breast cancer samples included in the study "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. "RNA.RAW.COUNTS" for all genes are reported here. "RNA.SCALED.COUNTS" report on filtered (for missing data) reads with matching Uniprot/swissprot identifier. Reads were then scaled and centered across samples and genes. This dataset was used for Figure 3 in the following manuscript: "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. accepted for publication本数据集包含研究《蛋白质基因组学解析人类同侧乳腺癌的演化进程》（Proteogenomics decodes the evolution of human ipsilateral breast cancer）中纳入的全部75例乳腺癌样本的RNA测序（RNA-seq）分析读段计数。该研究作者包括De Marchi T、Pyl PT、Sjöström M、Reinsbach SE、DiLorenzo S、Nystedt B、Tran L、Pekar G、Wärnberg F、Fredriksson I、Malmström P、Fernö M、Malmström L、Malmström J、Nimèus E。 此处报告了所有基因的"RNA.RAW.COUNTS"（原始读段计数）；"RNA.SCALED.COUNTS"（标准化读段计数）则对应经缺失数据过滤、且匹配UniProt/Swissprot标识符的读段。随后对所有样本与基因的读段进行了标准化与中心化处理。 本数据集被用于下述已被录用待发表论文的图3：《蛋白质基因组学解析人类同侧乳腺癌的演化进程》（Proteogenomics decodes the evolution of human ipsilateral breast cancer），作者包括De Marchi T、Pyl PT、Sjöström M、Reinsbach SE、DiLorenzo S、Nystedt B、Tran L、Pekar G、Wärnberg F、Fredriksson I、Malmström P、Fernö M、Malmström L、Malmström J、Nimèus E。