MACS2 peak detection analysis of the CtrA and GcrA ChIP-seq experiments.

CtrA (“CtrA Chip-seq”) and GcrA (“GcrA ChIP-seq”) ChIP-seq peaks were called using MACS2 software. The same analysis was performed on the respective total input DNA samples as a negative control. The q-value (false discovery rate, FDR) cut-off for called peaks was 0.05. Peaks are rank-ordered according to fold-enrichment and highlighted in red if the reads constituting them are significantly (at least twofold) enriched in the ChIP-seq sample. The peak intervals, peak summits, closest genes and statistics (-log10 of the p-values and q-values as well as the fold enrichment) are indicated for all detected peaks.
(XLSX)